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Bibliography


Howard H. Pattee - The physics of symbols: bridging the epistemic cut – BioSystems vol 60 – 2001 – Elsevier Science Ireland

http://www.informatics.indiana.edu/rocha/pattee/pattee.html

 

Michael Polanyi – Life’s Irreducible Structure – Science – 1968

http://www.compilerpress.ca/Competitiveness/Anno/Anno%20Polanyi%20Lifes%20Irreducible%20Structure%20Acience%201968.htm

 

Howard H. Pattee - The physics of symbols, and the evolution of semiotic controls - Workshop on Control Mechanisms for Complex Systems: Issues of Measurement and Semiotic Analysis  - 1996

https://www.academia.edu/863864/The_physics_of_symbols_and_the_evolution_of_semiotic_controls

 

Life: What A Concept! – Freeman Dyson, J. Craig Venter, George Church, Robert Shapiro, Dimitar Sasselov, Seth Lloyd – Edge Foundation – Special Event at Eastover Farm - 2008

http://edge.org/documents/life/Life.pdf

 

Gerald F. Joyce and Natasha Paul - A self-replicating ligase ribozyme - Departments of Chemistry and Molecular Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute - 2002

http://www.pnas.org/content/99/20/12733.full.pdf

 

F. Crick, S. Brenner, L. Barnett, RJ. Watts-Tobin - General Nature of the Genetic Code for Proteins - 1961

http://profiles.nlm.nih.gov/SC/B/C/B/J/_/scbcbj.pdf

 

David L Abel – The Formalism > Physicality Principle – The First Gene – pp 325-356 - 2011

http://www.researchgate.net/profile/David_L_Abel/publication/215525911_The_F__P_Principle_%28Formalism__Physicality_Principle%29/links/07deaf313564cb93109168bb.pdf

 

Eugene Koonin – The cosmological model of eternal inflation and the transition from chance to biological evolution in the history of life – Biology Direct – 2007

http://www.biologydirect.com/content/pdf/1745-6150-2-15.pdf

 

Rafael Cupurro and Birger Hjørland – The Concept of Information – Vol 37, The Annual Review of Information Science and Technology  – 2003

http://www.capurro.de/infoconcept.html

 

Three subsets of sequence complexity and their relevance to biopolymeric information - David L Abel, Jack T Trevors – Theoretical Biology and Medical Modeling 2:29 – 2005

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208958/

 

Claude E Shannon – A Mathematical Theory of Communication – The Bell Systems Technical Journal, Bell Laboratories – 1948

http://www.cs.ucf.edu/~dcm/Teaching/COP5611-Spring2012/Shannon48-MathTheoryComm.pdf

 

Howard H. Pattee – How does a molecule become a message – Communication in Development, Proceedings of the 28th Symposium, The Society for Developmental Biology – 1969

https://www.academia.edu/863859/How_does_a_molecule_become_a_message

 

Stephen Talbott  Getting Over the Code Delusion – The Nature Institute – February 2010

http://natureinstitute.org/txt/st/mqual/genome_4.htm

 

Kalevi Kull Biosemiotics in the twentieth century: a view from biology – Semiotica vol 127 1/4 – 1999

http://www.zbi.ee/~kalevi/bsxxfin.htm

 

Marcello Barbieri – A Short History of Biosemiotics - Biosemiotics 2009 – Springer Science

http://www.biosemiotica.it/internal_links/pdf/Marcello%20Barbieri%20%282009%29%20A%20Short%20History%20of%20Biosemiotics.pdf

 

David Abel  The Cybernetic Cut: progressing from description to prescription in systems theory – Open Cybernetics and Systems Journal – 2008

http://benthamopen.com/contents/pdf/TOCSJ/TOCSJ-2-252.pdf

 

Howard H. Pattee - Irreducible and complementary semiotic forms – Semiotica vol 134 1/4 - 2001

http://rs2theory.org/files/134_341_844.pdf

 

Group Discussions in Biosemiotics 2009 – Biosemiotica – International Society of Biosemiotic Studies

http://www.biosemiotica.it/internal_links/pdf/2009-%20Group%20Discussion%20of%20A%20Short%20History%200f%20Biosemiotics.pdf

 

Francis Crick – On Degenerate Templates and the Adapter Hypothesis – Cavendish Laboratory, Cambridge, England – 1955

http://genome.wellcome.ac.uk/assets/wtx030893.pdf

 

Howard H. Pattee – The Necessity of Biosemiotics: Matter-Symbol Complementarity – Introduction to Biosemiotics – 2008

http://www.researchgate.net/profile/Howard_Pattee/publication/225988428_The_Necessity_Of_Biosemiotics_Matter-Symbol_Complementarity/links/09e4150173c089a789000000.pdf

 

Marshall Nirenberg – Nobel Lecture – The genetic code – 1968

http://www.nobelprize.org/nobel_prizes/medicine/laureates/1968/nirenberg-lecture.pdf

 

Kaveli Kull, Claus Emmeche, Donald Favareau – Biosemiotic Questions – Biosemiotics - 2008

http://www.academia.edu/331163/Biosemiotic_questions

 

Heinz Penzlin – The riddle of "life," a biologist's critical view -- Naturwissenschaften - 2009

http://link.springer.com/article/10.1007%2Fs00114-008-0422-8#

 

Donald E. Johnson - What Might Be a Protocell’s Minimal Genome? – The First Gene – 2011

http://www.scienceintegrity.org/FirstGeneCh10.pdf

 

Anthony Forster, George Church - Towards Synthesis of a Minimum Cell – Molecular Systems Biology – 2006

http://msb.embopress.org/content/2/1/45

 

Marcello Barbieri – Biosemiotics: a new understanding of life – Naturwissenschaften – 2008

http://codebiology.org/pdf/Barbieri%20M%20%282008%29%20Biosemiotics.%20A%20new%20understanding%20of%20life.pdf

 

Howard H. Pattee – Physical and functional conditions of symbols codes and languages – Biosemiostics – 2008

https://www.academia.edu/4775461/Physical_and_functional_conditions_for_symbols_codes_and_languages

 

Rocha, Luis M., "Von Neumann and Natural Selection.", Lecture Notes – Indiana University

http://www.informatics.indiana.edu/rocha/i-bic/pdfs/ibic_lecnotes_c6.pdf

 

Moshe Sipper - Fifty Years of Research on Self-Replication: An Overview - Logic Systems Laboratory, Swiss Federal Institute of Technology – Artificial Life – 1998

http://www.cs.bgu.ac.il/~sipper/papabs/repreview.pdf

 

Howard H. Pattee – The Physics and Metaphysics of Biosemiotics - Journal of Biosemiotics - 2005

https://www.academia.edu/234713/The_Physics_and_Metaphysics_of_Biosemiotics

 

Marcello Barbieri – The Semantic Theory of Evolution – Harwood Academic Publishing – Switzerland – 1985

http://www.biosemiotica.it/internal_links/pdf/Barbieri%20%281985%29%20The%20Semantic%20Theory%20of%20Evolution%20%282%20MB%29.pdf

 

David L Abel – Is Life Unique? (Review Article) – Life – 2012

http://www.mdpi.com/2075-1729/2/1/106/pdf

 

 

 

Online Resources:

 

Code Biology: A glossary of terms and concepts Marcello Barbieri, Joachim de Beule, Jan-Hendrik Hofmeyr – 2014

http://codebiology.org/glossary.html

 

Kimball’s Biology Pages: On-Line Textbook, John W Kimball

http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/F/FallTerm.html

 

Kimball’s Biology Pages: The Genetic Code, John W Kimball

http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/C/Codons.html

 

Research Collaboratory for Structural Bioinformatics (RCSB) PDB-101 Educational Resource –Structural View of Biology

http://www.rcsb.org/pdb/101/structural_view_of_biology.do

 

Peter Raven, George Johnson – Biology Sixth Edition, How Scientists Think – Chapeville: Proving the tRNA Hypothesis – McGraw Hill–2002

http://www.mhhe.com/biosci/genbio/raven6b/graphics/raven06b/howscientiststhink/15-lab.pdf

 

Peter Raven, George Johnson – Biology Sixth Edition, How Scientists Think – Crick: The genetic code is read three bases at a time – McGraw Hill–2002

http://www.mhhe.com/biosci/genbio/raven6b/graphics/raven06b/howscientiststhink/13-lab.pdf

 

Peter Raven, George Johnson – Biology Sixth Edition, How Scientists Think – Nirenberg/Khorana: Breaking the Genetic Code – McGraw Hill –2002

http://www.mhhe.com/biosci/genbio/raven6b/graphics/raven06b/howscientiststhink/14-lab.pdf

 

Peter Raven, George Johnson – Biology Sixth Edition, How Scientists Think – McGraw Hill –2002

http://www.mhhe.com/biosci/genbio/raven6b/graphics/raven06b/howscientiststhink/howscientiststhink.html

 

 

 

 

 

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